IL_7LS2_203

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_203 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2371

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7LS2|1|m2|C|188
7LS2|1|m2|U|189
7LS2|1|m2|G|190
7LS2|1|m2|A|191
7LS2|1|m2|C|192
*
7LS2|1|m2|G|209
7LS2|1|m2|G|210
7LS2|1|m2|A|211
7LS2|1|m2|U|212
7LS2|1|m2|G|213

Current chains

Chain m2

18S rRNA

Nearby chains

Chain u

40S ribosomal protein S8