IL_7LS2_206

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

7LS2|1|m2|A|315

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_206 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.2009

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7LS2|1|m2|G|314
7LS2|1|m2|A|315
7LS2|1|m2|U|316
*
7LS2|1|m2|A|338
7LS2|1|m2|C|339

Current chains

Chain m2

18S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain r2

40S ribosomal protein S4, X isoform