IL_7LS2_213

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7LS2|1|m2|U|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_213 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.1548

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7LS2|1|m2|U|489
7LS2|1|m2|U|490
7LS2|1|m2|A|491
*
7LS2|1|m2|U|513
7LS2|1|m2|A|514

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24

Chain m

Elongation factor 2

Chain r2

40S ribosomal protein S4, X isoform