IL_7LS2_217

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_217 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2093

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS2|1|m2|G|537
7LS2|1|m2|A|538
7LS2|1|m2|C|539
*
7LS2|1|m2|G|549
7LS2|1|m2|C|550
7LS2|1|m2|C|551

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain T3

40S ribosomal protein S30