IL_7LS2_220

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_220 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2574

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7LS2|1|m2|U|568
7LS2|1|m2|C|569
7LS2|1|m2|C|570
7LS2|1|m2|A|571
*
7LS2|1|m2|U|583
7LS2|1|m2|U|584
7LS2|1|m2|A|585
7LS2|1|m2|A|586

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24