IL_7LS2_229
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_229 not in the Motif Atlas
- Geometric match to IL_8VTW_093
- Geometric discrepancy: 0.364
- The information below is about IL_8VTW_093
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7LS2|1|m2|U|803
7LS2|1|m2|A|804
7LS2|1|m2|C|805
*
7LS2|1|m2|G|862
7LS2|1|m2|A|863
7LS2|1|m2|A|864
7LS2|1|m2|U|865
7LS2|1|m2|A|866
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain E3
- 40S ribosomal protein S23
- Chain P3
- 40S ribosomal protein S15a
- Chain t
- 40S ribosomal protein S7
- Chain w2
- 40S ribosomal protein S11
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