IL_7LS2_232

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_232 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2122

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7LS2|1|m2|G|834
7LS2|1|m2|C|835
*
7LS2|1|m2|G|843
7LS2|1|m2|C|844
7LS2|1|m2|C|845

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24

Chain r2

40S ribosomal protein S4, X isoform