IL_7LS2_234

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_234 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3209

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7LS2|1|m2|C|879
7LS2|1|m2|G|880
7LS2|1|m2|C|881
*
7LS2|1|m2|G|909
7LS2|1|m2|A|910
7LS2|1|m2|G|911
7LS2|1|m2|G|912

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain t

40S ribosomal protein S7