IL_7LS2_236

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7LS2|1|m2|U|1018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_236 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.149

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7LS2|1|m2|G|926
7LS2|1|m2|G|927
7LS2|1|m2|A|928
7LS2|1|m2|C|929
*
7LS2|1|m2|G|1016
7LS2|1|m2|U|1017
7LS2|1|m2|U|1018
7LS2|1|m2|U|1019
7LS2|1|m2|U|1020

Current chains

Chain m2

18S rRNA

Nearby chains

Chain N3

40S ribosomal protein S13

Chain S3

40S ribosomal protein S27-like