IL_7LS2_245

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_245 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.2013

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS2|1|m2|U|1103
7LS2|1|m2|G|1104
7LS2|1|m2|C|1105
*
7LS2|1|m2|G|1131
7LS2|1|m2|G|1132
7LS2|1|m2|G|1133

Current chains

Chain m2

18S rRNA

Nearby chains

Chain F3

40S ribosomal protein S26

Chain N3

40S ribosomal protein S13

Chain S3

40S ribosomal protein S27-like

Chain p2

40S ribosomal protein S3a

Chain z2

40S ribosomal protein S17