IL_7LS2_246

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_246 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2245

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7LS2|1|m2|G|1110
7LS2|1|m2|C|1111
7LS2|1|m2|G|1112
*
7LS2|1|m2|C|1125
7LS2|1|m2|C|1126

Current chains

Chain m2

18S rRNA

Nearby chains

Chain S3

40S ribosomal protein S27-like

Chain o2

40S ribosomal protein SA

Chain p2

40S ribosomal protein S3a

Chain z2

40S ribosomal protein S17