IL_7LS2_251
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_251 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1647
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7LS2|1|m2|C|1232
7LS2|1|m2|C|1233
7LS2|1|m2|U|1234
*
7LS2|1|m2|G|1528
7LS2|1|m2|C|1529
7LS2|1|m2|G|1530
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A3
- 40S ribosomal protein S18
- Chain B3
- 40S ribosomal protein S19
- Chain C3
- 40S ribosomal protein S20
- Chain n2
- Transfer RNA; tRNA
- Chain x2
- 40S ribosomal protein S15
- Chain y2
- 40S ribosomal protein S16
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