IL_7LS2_271

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_271 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.1458

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS2|1|m2|G|1708
7LS2|1|m2|U|1709
7LS2|1|m2|C|1710
*
7LS2|1|m2|G|1828
7LS2|1|m2|U|1829
7LS2|1|m2|C|1830

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain h2

60S ribosomal protein L41

Chain m

Elongation factor 2