IL_7LS2_280

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

7LS2|1|m2|C|1785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_280 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.3944

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7LS2|1|m2|C|1752
7LS2|1|m2|C|1753
7LS2|1|m2|C|1754
*
7LS2|1|m2|G|1782
7LS2|1|m2|A|1783
7LS2|1|m2|G|1784
7LS2|1|m2|C|1785
7LS2|1|m2|G|1786

Current chains

Chain m2

18S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain Q2

60S ribosomal protein L24