IL_7LS2_281

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_281 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1062

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS2|1|m2|C|1843
7LS2|1|m2|4AC|1844
7LS2|1|m2|G|1845
*
7LS2|1|m2|C|1858
7LS2|1|m2|G|1859
7LS2|1|m2|G|1860

Current chains

Chain m2

18S rRNA

Nearby chains

Chain F3

40S ribosomal protein S26

Chain O3

40S ribosomal protein S14

Chain h2

60S ribosomal protein L41