IL_7LS2_294

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUG*CG(G7M)

Length

7 nucleotides

Bulged bases

7LS2|1|A2|U|1404

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_294 not in the Motif Atlas

Geometric match to IL_8C3A_029

Geometric discrepancy: 0.1273

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7LS2|1|A2|C|1402
7LS2|1|A2|C|1403
7LS2|1|A2|U|1404
7LS2|1|A2|G|1405
*
7LS2|1|A2|C|1416
7LS2|1|A2|G|1417
7LS2|1|A2|G7M|1418

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain d2

60S ribosomal protein L37