IL_7LS2_305

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)UC*GACGCG

Length

20 nucleotides

Bulged bases

7LS2|1|A2|A2M|3441, 7LS2|1|A2|C|3447, 7LS2|1|A2|C|3466

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|C|3437
7LS2|1|A2|5MC|3438
7LS2|1|A2|A|3439
7LS2|1|A2|A|3440
7LS2|1|A2|A2M|3441
7LS2|1|A2|U|3442
7LS2|1|A2|G|3443
7LS2|1|A2|C|3444
7LS2|1|A2|C|3445
7LS2|1|A2|U|3446
7LS2|1|A2|C|3447
7LS2|1|A2|OMG|3448
7LS2|1|A2|U|3449
7LS2|1|A2|C|3450
*
7LS2|1|A2|G|3462
7LS2|1|A2|A|3463
7LS2|1|A2|C|3464
7LS2|1|A2|G|3465
7LS2|1|A2|C|3466
7LS2|1|A2|G|3467

Current chains

Chain A2

28S rRNA

Nearby chains

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA