IL_7LS2_334
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAGG*UCGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_334 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.2532
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
7LS2|1|m2|U|1735
7LS2|1|m2|G|1736
7LS2|1|m2|A|1737
7LS2|1|m2|G|1738
7LS2|1|m2|G|1739
*
7LS2|1|m2|U|1799
7LS2|1|m2|C|1800
7LS2|1|m2|G|1801
7LS2|1|m2|A|1802
7LS2|1|m2|A|1803
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain K3
- 40S ribosomal protein S6
- Chain P2
- 60S ribosomal protein L23
- Chain Q2
- 60S ribosomal protein L24
- Chain u
- 40S ribosomal protein S8
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