IL_7LVK_007

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0638

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7LVK|1|I|C|239
7LVK|1|I|C|240
7LVK|1|I|A|241
7LVK|1|I|G|242
7LVK|1|I|U|243
7LVK|1|I|A|244
7LVK|1|I|G|245
*
7LVK|1|I|C|253
7LVK|1|I|G|254
7LVK|1|I|A|255
7LVK|1|I|A|256
7LVK|1|I|C|257
7LVK|1|I|G|258

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35