IL_7LVK_017

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7LVK|1|I|G|801, 7LVK|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0646

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|G|674
7LVK|1|I|A|675
7LVK|1|I|A|676
7LVK|1|I|A|677
7LVK|1|I|C|678
*
7LVK|1|I|G|799
7LVK|1|I|A|800
7LVK|1|I|G|801
7LVK|1|I|A|802
7LVK|1|I|U|803
7LVK|1|I|A|804
7LVK|1|I|G|805
7LVK|1|I|C|806

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15