IL_7LVK_030

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_030 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3408

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|G|875
7LVK|1|I|C|876
7LVK|1|I|A|877
7LVK|1|I|A|878
7LVK|1|I|G|879
7LVK|1|I|G|880
*
7LVK|1|I|C|897
7LVK|1|I|C|898
7LVK|1|I|A|899
7LVK|1|I|A|900
7LVK|1|I|C|901
7LVK|1|I|C|902

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16