IL_7LVK_101

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_101 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0693

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7LVK|1|I|C|2652
7LVK|1|I|U|2653
7LVK|1|I|A|2654
7LVK|1|I|G|2655
7LVK|1|I|U|2656
7LVK|1|I|A|2657
7LVK|1|I|C|2658
*
7LVK|1|I|G|2663
7LVK|1|I|G|2664
7LVK|1|I|A|2665
7LVK|1|I|C|2666
7LVK|1|I|C|2667
7LVK|1|I|G|2668

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6