IL_7LVK_118

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_118 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0466

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|G|1666
7LVK|1|I|G|1667
7LVK|1|I|A|1668
7LVK|1|I|A|1669
7LVK|1|I|C|1670
7LVK|1|I|U|1671
7LVK|1|I|A|1672
7LVK|1|I|G|1673
7LVK|1|I|G|1674
*
7LVK|1|I|C|1990
7LVK|1|I|U|1991
7LVK|1|I|G|1992
7LVK|1|I|U|1993
7LVK|1|I|C|1994

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14