IL_7LVK_122

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

7LVK|1|I|U|2111, 7LVK|1|I|A|2114, 7LVK|1|I|G|2116, 7LVK|1|I|U|2118, 7LVK|1|I|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_122 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3504

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7LVK|1|I|G|2110
7LVK|1|I|U|2111
7LVK|1|I|G|2112
7LVK|1|I|U|2113
7LVK|1|I|A|2114
7LVK|1|I|G|2115
7LVK|1|I|G|2116
7LVK|1|I|A|2117
7LVK|1|I|U|2118
7LVK|1|I|A|2119
7LVK|1|I|G|2120
7LVK|1|I|G|2121
7LVK|1|I|U|2122
*
7LVK|1|I|A|2176
7LVK|1|I|C|2177
7LVK|1|I|C|2178
7LVK|1|I|C|2179

Current chains

Chain I

23S rRNA

Nearby chains