IL_7M4V_006

3D structure

PDB id

7M4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4V_006 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.0991

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7M4V|1|A|G|195
7M4V|1|A|G|196
7M4V|1|A|A|197
7M4V|1|A|A|198
7M4V|1|A|G|199
7M4V|1|A|U|200
7M4V|1|A|G|201
*
7M4V|1|A|C|208
7M4V|1|A|U|209
7M4V|1|A|C|210
7M4V|1|A|A|211
7M4V|1|A|G|212
7M4V|1|A|U|213
7M4V|1|A|A|214
7M4V|1|A|C|215

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28