IL_7M4W_017

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7M4W|1|A|G|799, 7M4W|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4W_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1038

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7M4W|1|A|G|672
7M4W|1|A|A|673
7M4W|1|A|A|674
7M4W|1|A|A|675
7M4W|1|A|C|676
*
7M4W|1|A|G|797
7M4W|1|A|U|798
7M4W|1|A|G|799
7M4W|1|A|A|800
7M4W|1|A|U|801
7M4W|1|A|A|802
7M4W|1|A|G|803
7M4W|1|A|C|804

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15