IL_7M4W_120

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7M4W|1|a|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4W_120 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.13

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7M4W|1|a|G|143
7M4W|1|a|G|144
7M4W|1|a|A|145
7M4W|1|a|C|146
7M4W|1|a|A|147
7M4W|1|a|A|148
7M4W|1|a|C|149
*
7M4W|1|a|G|164
7M4W|1|a|C|165
7M4W|1|a|U|166
7M4W|1|a|A|167
7M4W|1|a|A|168
7M4W|1|a|U|169
7M4W|1|a|A|170
7M4W|1|a|C|171

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20