IL_7M4X_156

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

7M4X|1|a|C|1051

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4X_156 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3466

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7M4X|1|a|G|1047
7M4X|1|a|C|1048
7M4X|1|a|U|1049
7M4X|1|a|G|1050
7M4X|1|a|C|1051
7M4X|1|a|A|1052
7M4X|1|a|U|1053
*
7M4X|1|a|A|1201
7M4X|1|a|U|1202
7M4X|1|a|G|1203
7M4X|1|a|2MG|1204
7M4X|1|a|C|1205

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14