IL_7M4Z_013

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_013 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1121

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7M4Z|1|A|G|535
7M4Z|1|A|G|536
7M4Z|1|A|A|537
7M4Z|1|A|G|538
*
7M4Z|1|A|U|552
7M4Z|1|A|G|553
7M4Z|1|A|A|554
7M4Z|1|A|C|555

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20