IL_7M4Z_035

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UUAAGUG*CUAAAA

Length

13 nucleotides

Bulged bases

7M4Z|1|A|A|1139, 7M4Z|1|A|A|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_035 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0858

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7M4Z|1|A|U|1015
7M4Z|1|A|U|1016
7M4Z|1|A|A|1017
7M4Z|1|A|A|1018
7M4Z|1|A|G|1019
7M4Z|1|A|U|1020
7M4Z|1|A|G|1021
*
7M4Z|1|A|C|1137
7M4Z|1|A|U|1138
7M4Z|1|A|A|1139
7M4Z|1|A|A|1140
7M4Z|1|A|A|1141
7M4Z|1|A|A|1142

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain I

50S ribosomal protein L13