IL_7M4Z_041

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

7M4Z|1|A|A|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_041 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1374

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

7M4Z|1|A|G|1197
7M4Z|1|A|U|1198
7M4Z|1|A|A|1199
7M4Z|1|A|A|1200
7M4Z|1|A|G|1201
*
7M4Z|1|A|U|1235
7M4Z|1|A|A|1236
7M4Z|1|A|U|1237
7M4Z|1|A|C|1238

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15