IL_7M4Z_061

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7M4Z|1|A|G|1697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_061 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7M4Z|1|A|C|1684
7M4Z|1|A|G|1685
7M4Z|1|A|U|1686
7M4Z|1|A|A|1687
7M4Z|1|A|A|1688
7M4Z|1|A|C|1689
*
7M4Z|1|A|G|1694
7M4Z|1|A|G|1695
7M4Z|1|A|A|1696
7M4Z|1|A|G|1697
7M4Z|1|A|A|1698
7M4Z|1|A|A|1699
7M4Z|1|A|G|1700

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA