IL_7M4Z_086

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_086 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.2083

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7M4Z|1|A|C|2462
7M4Z|1|A|C|2463
7M4Z|1|A|A|2464
7M4Z|1|A|A|2465
7M4Z|1|A|G|2466
*
7M4Z|1|A|C|2476
7M4Z|1|A|G|2477
7M4Z|1|A|A|2478
7M4Z|1|A|C|2479
7M4Z|1|A|G|2480

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain L

50S ribosomal protein L16