IL_7M4Z_103

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGGAAG*UGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_103 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.2108

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7M4Z|1|A|U|2843
7M4Z|1|A|G|2844
7M4Z|1|A|G|2845
7M4Z|1|A|A|2846
7M4Z|1|A|A|2847
7M4Z|1|A|G|2848
*
7M4Z|1|A|U|2861
7M4Z|1|A|G|2862
7M4Z|1|A|A|2863
7M4Z|1|A|A|2864
7M4Z|1|A|G|2865

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19