3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_025 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.0899
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7M5D|1|1|G|856
7M5D|1|1|G|857
7M5D|1|1|G|858
7M5D|1|1|G|859
7M5D|1|1|U|860
7M5D|1|1|A|861
7M5D|1|1|G|862
*
7M5D|1|1|C|915
7M5D|1|1|G|916
7M5D|1|1|A|917
7M5D|1|1|A|918
7M5D|1|1|U|919
7M5D|1|1|A|920
7M5D|1|1|C|921

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27
Chain Z
50S ribosomal protein L30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0865 s