IL_7M5D_078

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GU(G7M)A*UCC

Length

7 nucleotides

Bulged bases

7M5D|1|1|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_078 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1332

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7M5D|1|1|G|2067
7M5D|1|1|U|2068
7M5D|1|1|G7M|2069
7M5D|1|1|A|2070
*
7M5D|1|1|U|2441
7M5D|1|1|C|2442
7M5D|1|1|C|2443

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

FME-PHE-PHE

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15