3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_148 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.1027
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

7M5D|1|2|G|887
7M5D|1|2|G|888
7M5D|1|2|A|889
7M5D|1|2|G|890
7M5D|1|2|U|891
7M5D|1|2|A|892
7M5D|1|2|C|893
7M5D|1|2|G|894
*
7M5D|1|2|U|905
7M5D|1|2|A|906
7M5D|1|2|A|907
7M5D|1|2|A|908
7M5D|1|2|A|909
7M5D|1|2|C|910

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain q
30S ribosomal protein S12

Coloring options:


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