IL_7M5D_168

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7M5D|1|2|C|1400, 7M5D|1|2|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_168 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.13

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|C|1399
7M5D|1|2|C|1400
7M5D|1|2|G|1401
*
7M5D|1|2|C|1501
7M5D|1|2|A|1502
7M5D|1|2|A|1503
7M5D|1|2|G|1504

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain A

Peptide chain release factor 1