IL_7MD7_087

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

7MD7|1|1A|U|2132, 7MD7|1|1A|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_087 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.1324

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MD7|1|1A|C|2129
7MD7|1|1A|U|2130
7MD7|1|1A|G|2131
7MD7|1|1A|U|2132
7MD7|1|1A|G|2133
7MD7|1|1A|A|2134
7MD7|1|1A|A|2135
7MD7|1|1A|C|2136
*
7MD7|1|1A|G|2155
7MD7|1|1A|G|2156
7MD7|1|1A|G|2157
7MD7|1|1A|A|2158
7MD7|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains