IL_7MD7_103

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_103 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.0593

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7MD7|1|1A|C|2652
7MD7|1|1A|U|2653
7MD7|1|1A|A|2654
7MD7|1|1A|G|2655
7MD7|1|1A|U|2656
7MD7|1|1A|A|2657
7MD7|1|1A|C|2658
*
7MD7|1|1A|G|2663
7MD7|1|1A|G|2664
7MD7|1|1A|A|2665
7MD7|1|1A|C|2666
7MD7|1|1A|C|2667
7MD7|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6