IL_7MD7_185

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

7MD7|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_185 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.52

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

7MD7|1|2A|C|272|||J
7MD7|1|2A|G|274
7MD7|1|2A|G|275
7MD7|1|2A|A|276
7MD7|1|2A|C|277
7MD7|1|2A|A|278
7MD7|1|2A|C|279
*
7MD7|1|2A|G|361
7MD7|1|2A|U|362
7MD7|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains