IL_7MD7_259

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

7MD7|1|2A|G|2116, 7MD7|1|2A|A|2117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_259 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3698

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7MD7|1|2A|G|2110
7MD7|1|2A|C|2111
7MD7|1|2A|G|2112
7MD7|1|2A|U|2113
7MD7|1|2A|A|2114
7MD7|1|2A|G|2115
7MD7|1|2A|G|2116
7MD7|1|2A|A|2117
7MD7|1|2A|U|2118
7MD7|1|2A|A|2119
7MD7|1|2A|G|2120
*
7MD7|1|2A|C|2178
7MD7|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains