IL_7MD7_333
3D structure
- PDB id
- 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 7MD7|1|2a|C|1200, 7MD7|1|2a|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MD7_333 not in the Motif Atlas
- Homologous match to IL_5J7L_048
- Geometric discrepancy: 0.1498
- The information below is about IL_5J7L_048
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7MD7|1|2a|G|1057
7MD7|1|2a|G|1058
*
7MD7|1|2a|U|1199
7MD7|1|2a|C|1200
7MD7|1|2a|A|1201
7MD7|1|2a|G|1202
7MD7|1|2a|C|1203
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2y
- Ribosome-associated inhibitor A
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