IL_7MD7_355
3D structure
- PDB id
- 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GACCC*GUGUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MD7_355 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3268
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
7MD7|1|1a|G|184
7MD7|1|1a|A|185
7MD7|1|1a|C|186
7MD7|1|1a|C|187
7MD7|1|1a|C|188
*
7MD7|1|1a|G|189|||L
7MD7|1|1a|U|190
7MD7|1|1a|G|191
7MD7|1|1a|U|192
7MD7|1|1a|C|193
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
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