IL_7MDZ_025

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

7MDZ|1|5|G|666, 7MDZ|1|5|A|667, 7MDZ|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_025 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.163

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7MDZ|1|5|G|487
7MDZ|1|5|G|488
*
7MDZ|1|5|C|665
7MDZ|1|5|G|666
7MDZ|1|5|A|667
7MDZ|1|5|C|668
7MDZ|1|5|C|669

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

Ribosomal protein L18

Chain r

eL28