IL_7MDZ_081

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7MDZ|1|5|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_081 not in the Motif Atlas

Geometric match to IL_6CZR_156

Geometric discrepancy: 0.3978

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7MDZ|1|5|C|2083
7MDZ|1|5|U|2084
7MDZ|1|5|G|2085
*
7MDZ|1|5|C|2272
7MDZ|1|5|G|2273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7

Chain Q

Ribosomal protein L18

Chain e

eL32