IL_7MDZ_090

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7MDZ|1|5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_090 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.2429

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7MDZ|1|5|G|2542
7MDZ|1|5|A|2543
7MDZ|1|5|G|2544
7MDZ|1|5|U|2545
7MDZ|1|5|G|2546
7MDZ|1|5|G|2547
*
7MDZ|1|5|C|2772
7MDZ|1|5|G|2773
7MDZ|1|5|C|2774

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38