3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGC*GG
Length
5 nucleotides
Bulged bases
7MDZ|1|5|G|2652
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_096 not in the Motif Atlas
Geometric match to IL_3NDB_004
Geometric discrepancy: 0.3099
The information below is about IL_3NDB_004
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

7MDZ|1|5|C|2651
7MDZ|1|5|G|2652
7MDZ|1|5|C|2653
*
7MDZ|1|5|G|2681
7MDZ|1|5|G|2682

Current chains

Chain 5
28S rRNA

Nearby chains

Chain g
60S ribosomal protein L34
Chain p
eL43

Coloring options:


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