IL_7MDZ_103

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7MDZ|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_103 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1275

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7MDZ|1|5|C|2867
7MDZ|1|5|G|2868
7MDZ|1|5|U|2869
7MDZ|1|5|A|2870
7MDZ|1|5|A|2871
7MDZ|1|5|C|2872
*
7MDZ|1|5|G|2877
7MDZ|1|5|G|2878
7MDZ|1|5|A|2879
7MDZ|1|5|U|2880
7MDZ|1|5|A|2881
7MDZ|1|5|A|2882
7MDZ|1|5|G|2883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41

Chain p

eL43