IL_7MDZ_114

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7MDZ|1|5|A|3785, 7MDZ|1|5|C|3791, 7MDZ|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_114 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1103

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7MDZ|1|5|C|3781
7MDZ|1|5|C|3782
7MDZ|1|5|A|3783
7MDZ|1|5|A|3784
7MDZ|1|5|A|3785
7MDZ|1|5|U|3786
7MDZ|1|5|G|3787
7MDZ|1|5|C|3788
7MDZ|1|5|C|3789
7MDZ|1|5|U|3790
7MDZ|1|5|C|3791
7MDZ|1|5|G|3792
*
7MDZ|1|5|C|3808
7MDZ|1|5|G|3809
7MDZ|1|5|C|3810
7MDZ|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41